Package: PhaseTypeR 1.0.5.9000
PhaseTypeR: General-Purpose Phase-Type Functions
General implementation of core function from phase-type theory. 'PhaseTypeR' can be used to model continuous and discrete phase-type distributions, both univariate and multivariate. The package includes functions for outputting the mean and (co)variance of phase-type distributions; their density, probability and quantile functions; functions for random draws; functions for reward-transformation; and functions for plotting the distributions as networks. For more information on these functions please refer to Bladt and Nielsen (2017, ISBN: 978-1-4939-8377-3) and Campillo Navarro (2019) <https://orbit.dtu.dk/en/publications/order-statistics-and-multivariate-discrete-phase-type-distributio>.
Authors:
PhaseTypeR_1.0.5.9000.tar.gz
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PhaseTypeR_1.0.5.9000.tgz(r-4.4-any)PhaseTypeR_1.0.5.9000.tgz(r-4.3-any)
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PhaseTypeR.pdf |PhaseTypeR.html✨
PhaseTypeR/json (API)
NEWS
| # Install 'PhaseTypeR' in R: |
| install.packages('PhaseTypeR', repos = c('https://rivasiker.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rivasiker/phasetyper/issues
Last updated 2 years agofrom:a370d20700. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 17 2024 |
| R-4.5-win | NOTE | Nov 17 2024 |
| R-4.5-linux | NOTE | Nov 17 2024 |
| R-4.4-win | NOTE | Nov 17 2024 |
| R-4.4-mac | NOTE | Nov 17 2024 |
| R-4.3-win | NOTE | Nov 17 2024 |
| R-4.3-mac | NOTE | Nov 17 2024 |
Exports:dDPHdMDPHdMPHdPHDPHMDPHMPHpDPHPHphase_type_to_networkpMDPHpMPHpPHqDPHqMDPHqMPHqPHrDPHreward_phase_typerFullDPHrFullMDPHrFullMPHrFullPHrMDPHrMPHrPHvar
Dependencies:clicpp11expmglueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs
PhaseTypeR
Rendered fromPhaseTypeR.Rmdusingknitr::rmarkdownon Nov 17 2024.Last update: 2022-07-17
Started: 2021-06-21
Using PhaseTypeR for population genetics
Rendered froma2_pop_gen_iker.Rmdusingknitr::rmarkdownon Nov 17 2024.Last update: 2021-11-22
Started: 2021-10-06
Using PhaseTypeR for the site frequency spectrum
Rendered froma3_phasetypeR_SFS.Rmdusingknitr::rmarkdownon Nov 17 2024.Last update: 2023-02-22
Started: 2021-10-06
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The Univariate Discrete Phase-Type Distribution | dDPH DPH_functions pDPH qDPH rDPH rFullDPH |
| The phase-type distribution | DPH generator_functions MDPH MPH PH |
| The Multivariate Discrete Phase-Type Distribution | dMDPH MDPH_functions pMDPH qMDPH rFullMDPH rMDPH |
| Mean of Phase-Type Distributions | mean mean.cont_phase_type mean.disc_phase_type mean.mult_cont_phase_type mean.mult_disc_phase_type |
| The Multivariate Continuous Phase-Type Distribution | dMPH MPH_functions pMPH qMPH rFullMPH rMPH |
| The Univariate Continuous Phase-Type Distribution | dPH PH_functions pPH qPH rFullPH rPH |
| Phase-type distribution to network | phase_type_to_network |
| Print method for phase-type objects | print.cont_phase_type print.disc_phase_type print.mult_cont_phase_type print.mult_disc_phase_type |
| Transformation of Phase-Type Distributions via Rewards | reward_phase_type |
| Pretty summary of the 'cont_phase_type' class. | summary.cont_phase_type |
| Pretty summary of the 'disc_phase_type' class. | summary.disc_phase_type |
| Pretty summary of the 'mult_cont_phase_type' class. | summary.mult_cont_phase_type |
| Pretty summary of the 'mult_dist_phase_type' class. | summary.mult_disc_phase_type |
| Variance and Covariance of Phase-Type Distributions | var var.cont_phase_type var.disc_phase_type var.mult_cont_phase_type var.mult_disc_phase_type |
