Package: PhaseTypeR 1.0.5.9000

PhaseTypeR: General-Purpose Phase-Type Functions

General implementation of core function from phase-type theory. 'PhaseTypeR' can be used to model continuous and discrete phase-type distributions, both univariate and multivariate. The package includes functions for outputting the mean and (co)variance of phase-type distributions; their density, probability and quantile functions; functions for random draws; functions for reward-transformation; and functions for plotting the distributions as networks. For more information on these functions please refer to Bladt and Nielsen (2017, ISBN: 978-1-4939-8377-3) and Campillo Navarro (2019) <https://orbit.dtu.dk/en/publications/order-statistics-and-multivariate-discrete-phase-type-distributio>.

Authors:Iker Rivas-González [aut, cre], Asger Hobolth [aut], Lars Nørvang Andersen [aut], Colin Guetemme [aut]

PhaseTypeR_1.0.5.9000.tar.gz
PhaseTypeR_1.0.5.9000.zip(r-4.7)PhaseTypeR_1.0.5.9000.zip(r-4.6)PhaseTypeR_1.0.5.9000.zip(r-4.5)
PhaseTypeR_1.0.5.9000.tgz(r-4.6-any)PhaseTypeR_1.0.5.9000.tgz(r-4.5-any)
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PhaseTypeR_1.0.5.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PhaseTypeR/json (API)
NEWS

# Install 'PhaseTypeR' in R:
install.packages('PhaseTypeR', repos = c('https://rivasiker.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rivasiker/phasetyper/issues

Pkgdown/docs site:https://rivasiker.github.io

On CRAN:

Conda:

5.37 score 2 stars 39 scripts 196 downloads 27 exports 12 dependencies

Last updated from:a370d20700. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE134
source / vignettesOK240
linux-release-x86_64NOTE129
macos-release-arm64NOTE226
macos-oldrel-arm64NOTE183
windows-develNOTE89
windows-releaseNOTE125
windows-oldrelNOTE106
wasm-releaseOK109

Exports:dDPHdMDPHdMPHdPHDPHMDPHMPHpDPHPHphase_type_to_networkpMDPHpMPHpPHqDPHqMDPHqMPHqPHrDPHreward_phase_typerFullDPHrFullMDPHrFullMPHrFullPHrMDPHrMPHrPHvar

Dependencies:clicpp11expmglueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs

PhaseTypeR

Rendered fromPhaseTypeR.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2022-07-17
Started: 2021-06-21

Using PhaseTypeR for population genetics

Iker Rivas-González

Rendered froma2_pop_gen_iker.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2021-11-22
Started: 2021-10-06

Using PhaseTypeR for the site frequency spectrum

Rendered froma3_phasetypeR_SFS.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2023-02-22
Started: 2021-10-06

Readme and manuals

Help Manual

Help pageTopics
The Univariate Discrete Phase-Type DistributiondDPH DPH_functions pDPH qDPH rDPH rFullDPH
The phase-type distributionDPH generator_functions MDPH MPH PH
The Multivariate Discrete Phase-Type DistributiondMDPH MDPH_functions pMDPH qMDPH rFullMDPH rMDPH
Mean of Phase-Type Distributionsmean mean.cont_phase_type mean.disc_phase_type mean.mult_cont_phase_type mean.mult_disc_phase_type
The Multivariate Continuous Phase-Type DistributiondMPH MPH_functions pMPH qMPH rFullMPH rMPH
The Univariate Continuous Phase-Type DistributiondPH PH_functions pPH qPH rFullPH rPH
Phase-type distribution to networkphase_type_to_network
Print method for phase-type objectsprint.cont_phase_type print.disc_phase_type print.mult_cont_phase_type print.mult_disc_phase_type
Transformation of Phase-Type Distributions via Rewardsreward_phase_type
Pretty summary of the 'cont_phase_type' class.summary.cont_phase_type
Pretty summary of the 'disc_phase_type' class.summary.disc_phase_type
Pretty summary of the 'mult_cont_phase_type' class.summary.mult_cont_phase_type
Pretty summary of the 'mult_dist_phase_type' class.summary.mult_disc_phase_type
Variance and Covariance of Phase-Type Distributionsvar var.cont_phase_type var.disc_phase_type var.mult_cont_phase_type var.mult_disc_phase_type